Students who commenced their course before 2012 should consult the rules below.
- Advanced Science honours (PG-ADVSC)—Rescinded
- Anatomy and Human Biology honours (MJ-ANHBY)
- Anthropology honours (MJ-ANTHY)—Rescinded. From 2013 available through the Bachelor of Arts (Honours) course (BH001) as Honours in Anthropology and Sociology
- Archaeology honours (MJ-ARCGY)—Rescinded. From 2013 available through the Bachelor of Arts (Honours) course (BH001)
- Biochemistry honours (MJ-BIOCH)
- Biomedical Science honours (PG-BIOMS)
- Biophysics honours (MJ-BIOPH)
- Botany honours (MJ-BOTNY)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Chemistry honours (MJ-CHEMS)
- Computer Science honours (MJ-INTCS)–Rescinded. From 2014 available through the Bachelor of Science (Honours) course (BH004) as Computer Science and Software Engineering
- Conservation Biology honours (MJ-CONBI or PG-CONBI)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Environmental Management honours (MJ-ENVMM)
- Environmental Science honours (PG-ENVSC)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Exercise and Health honours (PG-EXHSC)
- Forensic Chemistry honours (MJ-FORCH)—Rescinded
- Genetics honours (MJ-GENET or PG-GENET)
- Geochemistry honours (PG-GEOCH)
- Geography honours (MJ-GGRPY)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Geology honours (MJ-GEOGY)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Human Movement and Exercise Science honours (MJ-HMVMT)–Rescinded. This program has been renamed Sport Science, Exercise and Health honours.
- Land and Water Management honours (MJ-LWMGT)
- Linguistics honours (MJ-LINGO)—Rescinded. From 2013 available through the Bachelor of Arts (Honours) course (BH001)
- Marine and Coastal Management honours (MJ-MCMGT)
- Marine Biology honours (MJ-MRBIO)
- Marine Science honours (PG-MARSC)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)
- Mathematics honours (MJ-MATHS)
- Microbiology honours (MJ-MICRY)
- Nanotechnology honours (MJ-NANOT)
- Neuroscience honours (PG-NEURS)
- Pathology honours (MJ-PATHY)—Rescinded. From 2015 available through the Bachelor of Science (Honours) course (BH004)
- Pharmaceutical Science honours (MJ-PHARS)—Rescinded
- Pharmacology honours (MJ-PHARY)—Rescinded. From 2014 available through the Bachelor of Science (Honours) course (BH004)
- Physics honours (MJ-PHYSC)
- Physiology honours (MJ-PHYGY)
- Psychology honours (MJ-PSYCH)
- Restoration Ecology honours (MJ-RESTE)—Rescinded
- Science Communication honours (PG-SCCOM)
- Soil Science honours (MJ-SOILS)—Rescinded
- Sport Science, Exercise and Health honours (MJ-SSCEH)
- Zoology honours (MJ-ZOOLY)–Rescinded. From 2012 available through the Bachelor of Science (Honours) course (BH004)